Issue report: '-b archae' lead to error in build_draft_model_from_blast_results

[zhssakura]

Hi all,

I found a tiny issue running .gapseq draft.

-b|--biomass Gram "pos" OR "neg" OR "archae" OR "auto"? Default: "auto". Please note: if set to "auto", the external programms barrnap, usearch, and bedtools are required.

When using '-b archae' as a suggested flag for archaeal genome, an error occurs as follows:

Error in build_draft_model_from_blast_results(blast.res = blast.res, transporter.res = transporter.res,

The way to fix this is to use '-b archaea' instead. Hope this helps for an issue addressing.

Best, and Merry Xmas :)

Shan

[Waschina]

Dear Shan,

thank you for pointing this out. The issue you mentioned was fixed with a commit in July 2020 (commit: fd26d5c). I also just fixed another typo in the usage instructions of gapseq draft, that would have led to the same issue.

Best wishes
Silvio

[zhssakura]

That's awesome! Thank you Silvio.

Best wishes,

Shan