domain_search_class_*.txt: domain search analysis for beta-lactamases from the Integrative Database of Beta-Lactamase Enzymes
pfam*-class-*.fasta: sequences corresponding to the pfam domain region used in the construction of HMM models
pfam*-class-*.hmm: HMM models
class-*-hmmsearch.fasta: prospected sequences from genomes
cdhit-class*-pfam*.csv: prospected sequences from genomes with complete domain
Table_S1.csv: antimicrobial resistance metadata from 1827 genomes mined from BV-BRC database
proteins-mics-genomes.csv: protein group count by genome
comparing-proteins-genome-resistance.R: statistical analysis R script