Updated dDocent and scripts to work with vcftools 0.1.14

[TomaszSuchan]

I updated main dDocent pipeline to test for vcftools version on start and assign the proper flag to the variable (either --geno or --max-missing). From my testing, this change occurred in vcftools 0.1.12.

In filter_missing_ind.sh and pop_missing_filter.sh I did similar thing with --missing -> --missing-ind change that occurred in vcftools 0.1.13.

[jpuritz]

Thanks so much for this. I think your pull request only had one patch, but I pulled on your master dDocent branch to get all the changes. Cheers! Jon

…

-- Jon Puritz, PhD Postdoctoral Research Associate Northeastern University Marine Science Center 430 Nahant Rd, Nahant, MA 01908 Webpage: MarineEvoEco.com Email: jpuritz@gmail.com Cell: 401-338-8739 "The most valuable of all talents is that of never using two words when one will do." -Thomas Jefferson On December 1, 2016 at 6:45:22 AM, Tomasz Suchan (notifications@github.com) wrote: I updated main dDocent pipeline to test for vcftools version on start and assign the proper flag to the variable (either --geno or --max-missing). From my testing, this change occurred in vcftools 0.1.12. In filter_missing_ind.sh and pop_missing_filter.sh I did similar thing with --missing -> --missing-ind change that occurred in vcftools 0.1.13. ------------------------------ You can view, comment on, or merge this pull request online at: #29 Commit Summary - Corrected end of code box, l.39 File Changes - *M* tutorials/Reference Assembly Tutorial.md <https://github.com/jpuritz/dDocent/pull/29/files#diff-0> (3) Patch Links: - https://github.com/jpuritz/dDocent/pull/29.patch - https://github.com/jpuritz/dDocent/pull/29.diff — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#29>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AEnRR8kbRzfjRg9JUb4I1Gcoh73LQiVpks5rDrNSgaJpZM4LBS-N> .

[TomaszSuchan]

Hi Jon, sorry, somehow I added pull request for some old typo in Reference Assembly Tutorial.md I corrected a while ago!