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jsacco1/README.md

Hey there, I'm James. I'm a bioinformatician. I'm a scientist. I'm an AI enthusiast. Check out my work 👇

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👋  Hi there

I'm a bioinformatician based in San Francisco, CA, USA. I enjoy learning about how I can empower biomedical insights with computational tools. I love to stay up to date on the latest in functional genomics, including CRISPR and single cell analysis and multi-omics integration. I'm also deeply interested in the application of artificial intelligence/machine learning (AI/ML) to develop personalized treatments and new therapeutic strategies.

You can find me on Twitter @Sacco_jf. Feel free to tweet me any time. You can also check out my website https://jsacco1.github.io/ for my blog and more.

 

👇  Current project

I'm currently working on CRISPRia Design, a working module for CRISPR interference/activation (CRISPRi/a) library design by targeting cell-type specific transcription start sites. I would like to thank Horlbeck et. al. from the Weissman lab for their work in designing v2 of their CRISPRi/a genome-widelibrary. Follow the Github feed to keep up with my progress.

 

✏️  Blog posts

 

🧰  My toolbox

AWS  Linux  pandas  R  pytorch  python  scikitlearn  Vim  Ubuntu  VSCode  Github  

 

🖥  Past work

Readme Card

Readme Card

 

📊  Stats

James's Github Stats

GitHub Streak

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  1. Hail Hail Public

    Analyze 1000 Genomes VCF with Hail platform

    Jupyter Notebook

  2. vcf_annotate vcf_annotate Public

    Parse a VCF (v4.1) file; ExAC annotations (Python)

    Python

  3. Python-bioinformatics Python-bioinformatics Public

    Python scripts that do not need their own repo. Topics: BLAST parse, GDC query, sequence analysis

    Python 1

  4. R-bioinformatics R-bioinformatics Public

    population genetics and bioinformatics R scripts

    R 1

  5. utils utils Public

    useful scripts/commands

    1

  6. CRISPRiaDesign CRISPRiaDesign Public

    Jupyter Notebook