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Development #3

Merged
merged 134 commits into from
Oct 1, 2020
Merged

Development #3

merged 134 commits into from
Oct 1, 2020

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jtimonen
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@jtimonen jtimonen commented Oct 1, 2020

Development version of 1.0.0 ready for release

@jtimonen
new dev brach
077cb50
@jtimonen
edit startup message and lint.R
b10514a
@jtimonen
start large refactor
6c20bd5
@jtimonen
update model block
9b1c980
@jtimonen
whole lgp.stan refactored
2ca6cc6
@jtimonen
use /* */ for multi-line comments
1376c81
@jtimonen
fix bugs in stan functions and write tests
9378f99
@jtimonen
write tests for STAN_log_prior
5d36125
@jtimonen
add tests for small utilities
bd7389a
@jtimonen
add tests for stan kernel array functions
2fcbd19
@jtimonen
add test that covers src/stanExports_lgp.h
4275747
@jtimonen
create new advanced formula syntax
b6e43c3
@jtimonen
cleanup
1747145
@jtimonen
large developments to lgp_formula
b8babfc
@jtimonen
create new parsing module
c910021
@jtimonen
restructure documentation to hold multiple objects per page
420cb29
@jtimonen
develop covariate parsing
facc9fe
@jtimonen
add symlink to stan files in test/testthat
cc84489
@jtimonen
create dev-cpp.R
c4cc025
@jtimonen
automatically remove #include <exporter.h> to avoid linker error
c159c61
@jtimonen
edit tests to use get_stream()
a4dc649
@jtimonen
update parse_data and covariate format for stan
0c509f4
@jtimonen
rework lgpmodel class
ca75952
@jtimonen
improve test coverage on parsing
773d496
@jtimonen
rework stan code
1f1664c
@jtimonen
start creating formula syntax with at most 3 factors, if one is heter…
20f6c60 
…(id) etc.
@jtimonen
improve formula parsing and add a lot of validation
611c563
@jtimonen
work on parsing idx_expand
169bd02
@jtimonen
separate sim module with file and function naming
85c5c56
@jtimonen
create new rstanarm-like syntax for defining priors
3b53ed9
@jtimonen
improve tests
0e1b8f6
@jtimonen
add original data as a slot of lgpmodel
35566f2
@jtimonen
update tutorial
988950c
@jtimonen
create plot_component using grid.arrange
25a0cf9
@jtimonen
fix docs and tests
895b213
@jtimonen
add select
ea2e0b2
@jtimonen
probabilistic selection
36f7796
@jtimonen
restructure selection
6003c3f
@jtimonen
decide which functions to export in v1.0.0
da9655d
@jtimonen
rename sim module
22f0eb1
@jtimonen
smal fix in sim
b0d34f1
@jtimonen
edit .travis.yml
c87b251
@jtimonen
fix _pkgdown.yml
427bce9
@jtimonen
edit travis
f563b77
@jtimonen
edit travis conf
32c66da
@jtimonen
one more travis attempt
09c604b
@jtimonen
implement out-of-sample KR
b80b3ae
@jtimonen
add progress bar
1eb4bb9
@jtimonen
new travis conf
acd2626
@jtimonen
edit readme
683133d
@jtimonen
Update README.md
7eb5945
@jtimonen
update docs
a40077d
@jtimonen
fix scaling of x_pred
6a46608
@jtimonen
allow data types like ordered factor
4248e9b
@jtimonen
small fixes
8fe4540
@jtimonen
small edit in sim
be7f856
@jtimonen
fix y_transform in plot_api_g
783159c
@jtimonen
fix docs and exports in pkgdown
9c6b6c4
@jtimonen jtimonen merged commit b43c799 into master Oct 1, 2020
@jtimonen jtimonen deleted the development branch October 1, 2020 05:28
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