This is an experiment in displaying uncertain topologies. It is being developed concurrently with my other repository figtreejs-react.
Currently most development is happening in figtreejs-react, so set up is a little more involved then the usual clone and install.
git clone https://github.com/jtmccr1/sars2.git
cd sars2
yarn install
Clone and install figtreejs-react.
We then have to link to figtreejs-react. In the figtreejs-react directory
yarn link
in the sars 2 directory
yarn link "figtreejs-react"
To avoid an invalid hooks error we have to tell figtreejs-react to use the react in sars2. So back in that directory
npm link PATH/TO/SARS2/node_modules/react
finally
yarn start
Analysis was done by Verity Hill, Sam Hong, Guy Baele, and Phillipe Lemey.
Genetic data was obtained from http://gisaid.org and table of acknowledgments is in the public directory.