Anisotroopic voxel size - sigma configuration

[haesleinhuepf]

Hi @maarzt ,

I'm working with a dataset with voxel size 0.4x0.4x1.4 microns. Anisotropic voxels are quite common. Is it possible to configure sigmas for filters individually for XY and Z? Alternatively: Would it be possible to run filters in 2D slice by slice? That might make the whole processing much faster.

Thanks!

Cheers,
Robert

[maarzt]

Labkit already addresses anisotropic images. The sigma used in Z will be scaled automatically, according to the actual voxel size. This should work, if the voxel size is correctly set in FIJI.

You can change a image to 2D+time if you want it to be segmented in plans. This should become simpler in the future.

TODO: Display the pixel size and allow to change it.