Add support for WSI-level classification #542
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* add panda config * adjust batch size * addressed comments * addressed comments * addressed comments
* add foreground kaggle * added random foreground sampler kaggle * refactored sampler * moved get_mask * typo * refactor sampler * refactor sampler * addressed comments * addressed comments
…e-support-wsi-level-tasks
* add mpp conversion * formatting * addressed comments * addressed comments * addressed comments * formatting * formatting * formatting
* added panda dataset class * clean up * remove samples with noisy labels * clean up table in dataset readme * added function for stratified splits * added unit tests * cleanup * addressed comments * fixed issue with resource download * validation fix * updated readme * added to mkdocs * added image_dir to exception print * updated root path in yaml config * added panda to datasets overview table in docs * added md5 hash for downloaded resources * update init * added camelyon16 * added camelyon16 * updated camelyon16 class * added tests and config * formatting * formatting * formatting * formatting * added test files * formatting * lint * added target transforms * formatting * fixed dataset * addressed comments * addressed comments * fix test * fix test * fixed test * addressed comments * updated loss * fix annotations * lint --------- Co-authored-by: Nicolas Kaenzig <nkaenzig@gmail.com>
* updated configs * adjust patience * addressed comments * fixed typo * remove prefetch factor
* Updated developer guide (#418) * Update `TotalSegmentator2D` dataset to fetch all the slices (#416) * Move metrics to CPU when using single device (#446) * Remove total segmentator classification dataset (#450) * updated eva logo (#454) * updated eva logo * renamed files * Update actions/checkout digest to a5ac7e5 (#458) Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com> * Add configuration logger (#466) * Update `README` with paper citation (#474) * update docs (#482) * Update img shields of README (#480) * Fix `torch` and `jsonargparse` versions (#483) * update depedencies * update * bump micro version (#486) * update config links (#487) * Update paper citation format (#489) * Update the vision dataset return types to `tv_tensors` (#478) * Refactor embeddings writer (#461) * fixed phikon configs (#493) * Refactor embeddings datasets (#495) * Add doc tests and minor fixes (#492) * support setting download as env-variable (#514) * updated confis and doc * typo * update datasets * fixed types * src/eva/core/callbacks/writers/embeddings/base.py * formatting * types --------- Co-authored-by: Nicolas Känzig <36882833+nkaenzig@users.noreply.github.com> Co-authored-by: ioangatop <johngatop@gmail.com> Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
* updated layout * updated layout * addressed comment
* updated docs * update leaderboard * update docs and links
nkaenzig
approved these changes
Jun 21, 2024
nkaenzig
changed the title
ioangatop
approved these changes
Jun 24, 2024
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closes #360