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Add support for WSI-level classification #542
Add support for WSI-level classification #542
Commits on Apr 10, 2024
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Commits on Apr 16, 2024
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Add baseline
panda
workflow (#373)* add panda config * adjust batch size * addressed comments * addressed comments * addressed comments
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Commits on Apr 23, 2024
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Commits on Apr 25, 2024
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Commits on Apr 26, 2024
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Commits on Apr 30, 2024
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Simple baseline sampler for foreground patches (#394)
* add foreground kaggle * added random foreground sampler kaggle * refactored sampler * moved get_mask * typo * refactor sampler * refactor sampler * addressed comments * addressed comments
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Commits on May 2, 2024
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Merge remote-tracking branch 'origin/main' into 360-aggregated-featur…
…e-support-wsi-level-tasks
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Commits on May 6, 2024
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Commits on May 7, 2024
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Commits on May 8, 2024
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Commits on May 10, 2024
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* add mpp conversion * formatting * addressed comments * addressed comments * addressed comments * formatting * formatting * formatting
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Commits on May 13, 2024
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Commits on May 22, 2024
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Commits on May 23, 2024
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Commits on May 24, 2024
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Commits on May 27, 2024
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Commits on May 29, 2024
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Commits on Jun 6, 2024
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459 add camelyon16 slide level task (#476)
* added panda dataset class * clean up * remove samples with noisy labels * clean up table in dataset readme * added function for stratified splits * added unit tests * cleanup * addressed comments * fixed issue with resource download * validation fix * updated readme * added to mkdocs * added image_dir to exception print * updated root path in yaml config * added panda to datasets overview table in docs * added md5 hash for downloaded resources * update init * added camelyon16 * added camelyon16 * updated camelyon16 class * added tests and config * formatting * formatting * formatting * formatting * added test files * formatting * lint * added target transforms * formatting * fixed dataset * addressed comments * addressed comments * fix test * fix test * fixed test * addressed comments * updated loss * fix annotations * lint --------- Co-authored-by: Nicolas Kaenzig <nkaenzig@gmail.com>
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Commits on Jun 10, 2024
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475 define slide level evaluation protocol (#511)
* updated configs * adjust patience * addressed comments * fixed typo * remove prefetch factor
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Commits on Jun 11, 2024
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update 360-aggregated-feature before PR to main (#527)
* Updated developer guide (#418) * Update `TotalSegmentator2D` dataset to fetch all the slices (#416) * Move metrics to CPU when using single device (#446) * Remove total segmentator classification dataset (#450) * updated eva logo (#454) * updated eva logo * renamed files * Update actions/checkout digest to a5ac7e5 (#458) Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com> * Add configuration logger (#466) * Update `README` with paper citation (#474) * update docs (#482) * Update img shields of README (#480) * Fix `torch` and `jsonargparse` versions (#483) * update depedencies * update * bump micro version (#486) * update config links (#487) * Update paper citation format (#489) * Update the vision dataset return types to `tv_tensors` (#478) * Refactor embeddings writer (#461) * fixed phikon configs (#493) * Refactor embeddings datasets (#495) * Add doc tests and minor fixes (#492) * support setting download as env-variable (#514) * updated confis and doc * typo * update datasets * fixed types * src/eva/core/callbacks/writers/embeddings/base.py * formatting * types --------- Co-authored-by: Nicolas Känzig <36882833+nkaenzig@users.noreply.github.com> Co-authored-by: ioangatop <johngatop@gmail.com> Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
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Commits on Jun 12, 2024
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Updated documentation with new datasets and leaderboard (#531)
* updated layout * updated layout * addressed comment
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Commits on Jun 17, 2024
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532 update leaderboard results with slide level tasks (#538)
* updated docs * update leaderboard * update docs and links
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Commits on Jun 18, 2024
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Commits on Jun 21, 2024
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