Search for Prokaryote Iron Response Elements
If you install the two dependencies, you should be able to run spire from the directory it is located in.
Run without any additional arguments, spire will print out diagnostics on how
many IRE sequences were found. Calling spire with
--help will show the
additional output options.
--text will show a human-readable overview of
--stats will show some statistics. Multiple output options can
be used together.
SPIRE is licensed under the GNU General Public License version 3 or later, see
LICENSE file for details.
Copyright 2008-2012 Kai Blin
If you found SPIRE useful, please cite The bifunctional role of aconitase in Streptomyces viridochromogenes Tü494 Ewelina Michta, Klaus Schad, Kai Blin, Regina Ort-Winklbauer, Marc Röttig, Oliver Kohlbacher, Wolfgang Wohlleben, Eva Schinko, and Yvonne Mast Environmental Microbiology (2012) doi: 10.1111/1462-2920.12006