bioinfo-PERL-course

PERL for Bioinformatics, UENF. June 12-13, 2017.

Files added

• Course-schedule.docx
• PPTs: MS PowerPoint Slides (.pptx)
• Scripts: Perl scripts for each slide.

Useful websites

• https://www.perl.org/books/beginning-perl/
• http://www.learn-perl.org/
• https://www.perl.org/get.html
• http://search.cpan.org/
• www.cbkihong.com/download/perltut.pdf
• http://www.kodegod.com/learn-programming/101-programs-to-build-your-programming-logic-using-c-programming/
• https://www.youtube.com/watch?v=UScm9avQM1Y
• On ubuntu: perl -e 'foreach(1..15){$u = sprintf "http://cbsu.tc.cornell.edu/lab/doc/PerlBio_%02d.pdf\n",$_; system("wget $u") }'
• Perl functions: https://perldoc.perl.org/index-functions.html
• Special variables: http://perl101.org/special-variables.html

• http://web.stanford.edu/class/gene211/handouts/How_Perl_HGP.html
• http://www.perlmonks.org/?node_id=823275
• Perl camel: http://archive.oreilly.com/pub/a/oreilly/perl/usage/

Download URLs

• Notepad++: https://notepad-plus-plus.org/ (https://notepad-plus-plus.org/repository/7.x/7.3.3/npp.7.3.3.Installer.exe)
• ActivePerl : https://www.activestate.com/activeperl/downloads (http://downloads.activestate.com/ActivePerl/releases/5.24.1.2402/ActivePerl-5.24.1.2402-MSWin32-x86-64int-401627.exe)

Tips and tricks

• Notepad++: https://www.youtube.com/watch?v=PzjPu5F9K9Y
• http://stackoverflow.com/questions/282329/what-are-five-things-you-hate-about-your-favorite-language/1698964#1698964

Guidelines for reproducible research

• https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076505/