Optical Map error correction software
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README.md

cOMet

An error correction tool for optical mapping data

Quick steps:

Compile the package in the root folder: make
Go to bin folder
Run cOMet: ./cOMet Rmap_input_file_path_and_filename

For running in parallel:

Compile the package in the root folder: make parallel
Go to bin folder
Run cOMet: ./cOMet <Rmap_input_file_path_and_filename> <Number_of_parallel_streams> <stream_index> 


For example, if total number of Rmaps is 1,000,000 and total number of streams is 1000. Then stream_index=1 will error correct Rmaps 1     to 1000. stream_index=2 will error correct Rmaps 1001 to 2000 and so on.