attempting one mroe time

.github/workflows/main.yml

@@ -8,27 +8,7 @@ on:
   # Triggers the workflow 9:00 PM every sunday
   - cron: "0 21 * * 0"
 jobs:
-  # build:
-
-  #   runs-on: ubuntu-latest
-  #   steps:
-  #   - uses: actions/checkout@v2
-  #   # - uses: psf/black@stable
-  #   - name: Set up Python 3.10
-  #     uses: actions/setup-python@v2
-  #     with:
-  #       python-version: '3.10'
-  #   - name: Install dependencies
-  #     run: |
-  #       python -m pip install --upgrade pip
-  #       pip install flake8 
-  #       pip install .
-  #   - name: Lint with flake8
-  #     run: |
-  #       # stop the build if there are Python syntax errors or undefined names
-  #       flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
-  #       # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-  #       flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+
   test:
     strategy:
       fail-fast: false
@@ -53,39 +33,8 @@ jobs:
         cd apptainer-${VERSION}
         ./mconfig -v -p /usr/local
         make -C ./builddir all && sudo make -C ./builddir install
-        singularity --version
-        singularity pull docker://kipoi/kipoi-docker:attentivechrome
-        singularity exec kipoi-docker_attentivechrome.sif kipoi test AttentiveChrome/E003 --source=kipoi
-    # - name: Install dependencies
-    #   shell: bash -l {0}
-    #   run: |
-    #     mkdir -p /home/runner/work/singularity/
-    #     python -m pip install --upgrade pip
-    #     pip install .
     - name: Test with pytest
-      shell: bash -l {0}
       run: |
+        singularity pull docker://kipoi/kipoi-docker:attentivechrome
         singularity exec kipoi-docker_attentivechrome.sif kipoi test AttentiveChrome/E003 --source=kipoi
-  # testdockerandsingularity:
-
-  #   runs-on: ubuntu-latest
-  #   env:
-  #     GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  #     ZENODO_ACCESS_TOKEN: ${{ secrets.ZENODOACCESSTOKEN }}
-  #   steps:
-  #   - uses: actions/checkout@v2
-  #   - name: Set up Python 3.10
-  #     uses: actions/setup-python@v2
-  #     with:
-  #       python-version: '3.10'
-  #   - name: Install dependencies
-  #     run: |
-  #       sudo apt-get update && sudo apt-get install -y libhdf5-serial-dev pkg-config squashfs-tools
-  #       python -m pip install --upgrade pip
-  #       pip install .
-  #   - name: Test kipoi_containers and send coverage report to coveralls.io
-  #     run: |-
-  #       pip install coveralls
-  #       docker pull kipoi/kipoi-docker:mmsplice
-  #       coverage run -m pytest -s test-docker/test_docker_handler.py test-singularity test-containers/test_update_all_singularity_images.py
-  #       coveralls --service=github
+        singularity --version