R package for Clustering and Visualization of structure in ecological data
This package is targeted at fitting STRUCTURE type model on ecological species abundance and presence-absence data both at local and large geographic scales - together with high quality visualizations of the fitted models.
If you find ecostructure, please cite our paper
White, Alexander E. and Dey, Kushal K. and Mohan, Dhananjai and Stephens, Matthew and Price, Trevor D. Regional influences on community structure across the tropical-temperate divide. Nature Communications. 2019. 10 (1). 2646. 10.1038/s41467-019-10253-6.
Install ecostructure following the instructions below.
Then load ecostructure
Some examples of produced using our ecostructure package
If you want to try ecostructure and replicate figures like this, please check our tutorial here.
We thank Prof. Trevor D. Price and Dhananjai Mohan for data collection for our accompanying paper. We thank our mentors Prof. Matthew Stephens and Prof. Trevor Price for helpful suggestions and discussions.
You are also most welcome to contribute to ecostructure !!