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Makefile
Makefile
 
 
README.md
README.md
 
 
cellular_potts_adhesion.cpp
cellular_potts_adhesion.cpp
 
 
cellular_potts_adhesion.hpp
cellular_potts_adhesion.hpp
 
 
cellular_potts_adhesive_hamiltonian.cpp
cellular_potts_adhesive_hamiltonian.cpp
 
 
cellular_potts_cell.cpp
cellular_potts_cell.cpp
 
 
cellular_potts_cell.hpp
cellular_potts_cell.hpp
 
 
cellular_potts_definition.cpp
cellular_potts_definition.cpp
 
 
cellular_potts_definition.hpp
cellular_potts_definition.hpp
 
 
cellular_potts_field.hpp
cellular_potts_field.hpp
 
 
cellular_potts_gnuplot.cpp
cellular_potts_gnuplot.cpp
 
 
cellular_potts_gnuplot.hpp
cellular_potts_gnuplot.hpp
 
 
cellular_potts_hamiltonian.cpp
cellular_potts_hamiltonian.cpp
 
 
cellular_potts_hamiltonian.hpp
cellular_potts_hamiltonian.hpp
 
 
cellular_potts_init_configuration.cpp
cellular_potts_init_configuration.cpp
 
 
cellular_potts_init_configuration.hpp
cellular_potts_init_configuration.hpp
 
 
cellular_potts_initstate.cpp
cellular_potts_initstate.cpp
 
 
cellular_potts_initstate.hpp
cellular_potts_initstate.hpp
 
 
cellular_potts_io.cpp
cellular_potts_io.cpp
 
 
cellular_potts_io.hpp
cellular_potts_io.hpp
 
 
cellular_potts_main.cpp
cellular_potts_main.cpp
 
 
cellular_potts_measurement.cpp
cellular_potts_measurement.cpp
 
 
cellular_potts_motion_trace.cpp
cellular_potts_motion_trace.cpp
 
 
cellular_potts_motion_trace.hpp
cellular_potts_motion_trace.hpp
 
 
cellular_potts_observation.cpp
cellular_potts_observation.cpp
 
 
cellular_potts_observation.hpp
cellular_potts_observation.hpp
 
 
cellular_potts_observation_type.cpp
cellular_potts_observation_type.cpp
 
 
cellular_potts_observation_type.hpp
cellular_potts_observation_type.hpp
 
 
cellular_potts_polarity.cpp
cellular_potts_polarity.cpp
 
 
cellular_potts_polarity.hpp
cellular_potts_polarity.hpp
 
 
cellular_potts_polarity_motion.cpp
cellular_potts_polarity_motion.cpp
 
 
cellular_potts_random.cpp
cellular_potts_random.cpp
 
 
cellular_potts_random.hpp
cellular_potts_random.hpp
 
 
cellular_potts_region.cpp
cellular_potts_region.cpp
 
 
cellular_potts_region.hpp
cellular_potts_region.hpp
 
 
cellular_potts_schedule.cpp
cellular_potts_schedule.cpp
 
 
cellular_potts_schedule.hpp
cellular_potts_schedule.hpp
 
 
cellular_potts_shape.cpp
cellular_potts_shape.cpp
 
 
cellular_potts_shape.hpp
cellular_potts_shape.hpp
 
 
cellular_potts_simulation.cpp
cellular_potts_simulation.cpp
 
 
cellular_potts_simulation.hpp
cellular_potts_simulation.hpp
 
 
cellular_potts_site.cpp
cellular_potts_site.cpp
 
 
cellular_potts_site.hpp
cellular_potts_site.hpp
 
 
cellular_potts_state.cpp
cellular_potts_state.cpp
 
 
cellular_potts_state.hpp
cellular_potts_state.hpp
 
 
cellular_potts_type.cpp
cellular_potts_type.cpp
 
 
cellular_potts_type.hpp
cellular_potts_type.hpp
 
 
cellupar_potts_adhesion_motion.cpp
cellupar_potts_adhesion_motion.cpp
 
 
toolbox.cpp
toolbox.cpp
 
 
toolbox.hpp
toolbox.hpp
 
 
toolbox_correlation.hpp
toolbox_correlation.hpp
 
 
toolbox_corrlation.cpp
toolbox_corrlation.cpp
 
 

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Cellular_Potts

This program simulates cellular dynamics on the basis of the Cellular Potts model with adhesion polarities.

This program was used in the following papers:

  • Katsuyoshi Matsushita, "Emergence of collective propulsion through cell-cell adhesion", Physical Review E, 97(4) (2018) 042413(5)(arXiv:1708.09593)

  • Katsuyoshi Matsushita, "Cell-alignment patterns in the collective migration of cells with polarized adhesion" Physical Review E 95(3) (2017) 032415(12)

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