Network-based prediction of protein interactions doi: https://doi.org/10.1101/275529
All data files used in the manuscript are publicly available at the references in the paper. Here we share the core network files with Entrez gene IDs and codes to help the use of our method on other datasets.
To compile the code, type: g++ -O3 L3.cpp -o L3.out
To run the code on a tab-separated network file of 3 columns (numerical_id_1 tab numerical_id_2 tab weight), run: ./L3.out hi-ii-14.txt
The output file lists all new predicted links ordered by their L3 score as the 3rd column.