save out to txt

[JoJoBe2017]

Hello,

How do I save out the magic massaged results (cell by gene matrix) into txt file so that I can import to R?

Thank you.

[dpcook]

Hey there,

After you go through their workflow, you can export to CSV using the to_csv function from Pandas with the following:

mat = scdata.magic.data
mat.to_csv(path_or_buf="~/Data/etc/lmagic.matrix.csv")

[JoJoBe2017]

yes, I figured out. Thanks.