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csi index #72

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giuliafrascarelli opened this issue Jan 31, 2023 · 3 comments
Open

csi index #72

giuliafrascarelli opened this issue Jan 31, 2023 · 3 comments
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enhancement New feature or request todo This issue will be addressed in a future update

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@giuliafrascarelli
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Hi!
First, thank you for the nice program!

I am currently working with lentil WGS data and the vcf cannot be tbi indexed but I found that Pixy does not support the csi index.
There is a way to solve the problem or do you have any suggestions?

Thanks!
Giulia
@giuliafrascarelli giuliafrascarelli added the enhancement New feature or request label Jan 31, 2023
@ksamuk ksamuk added the todo This issue will be addressed in a future update label Feb 2, 2023
@ksamuk
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ksamuk commented Feb 2, 2023

Hi Giulia, there isn't currently support for .csi indexes, but I'd like to add it in a future update. The only way around this currently would be to split your VCF into smaller chunks and re-index with .tbi.

@xiekunwhy
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Hi,

Also request for csi indexes supporting.

Best,
Kun

@Jolvii85
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Hi,

Request for csi index supporting.

Best,

Wei

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@ksamuk @xiekunwhy @Jolvii85 @giuliafrascarelli