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KMC

The project is a fork of KMC, see its doc.

This is a modified version of KMC, in particular there are a kmc_dump version modified for generate the kmers occurances as input of an Hadoop Project.

kmc_dump_inverted

kmc_dump_inverted prints in inverted way the result of kmc_dump:

...
21876582	ACT
...

kmc_dump_indexed

kmc_dump_indexed prints with the line also the sequence identifier, based on the database name previusly generated from the program kmc. The result is as follows:

...
seq7.fasta	ACT	21876582
...

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Revisited code for kmc_dump

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  • C++ 90.7%
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