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circle results in "no data found" when GRanges has names #84

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seandavi opened this issue Nov 16, 2016 · 4 comments
Closed

circle results in "no data found" when GRanges has names #84

seandavi opened this issue Nov 16, 2016 · 4 comments

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@seandavi
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If the GRanges has names associated with the rows, I get no data found. Version 1.22.0 of ggbio and 2.2.0 of ggplot.

@lawremi
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lawremi commented Nov 16, 2016

Is there any code for reproducing this?

@seandavi
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> library(ggbio)
> data("CRC", package = "biovizBase")
> mut.gr
*** output flushed ***
> p <- ggbio() + circle(mut.gr, geom = "rect", color = "steelblue")
> names(mut.gr) = rep('abc',length(mut.gr))
> p <- ggbio() + circle(mut.gr, geom = "rect", color = "steelblue")
Error in ggbio() + circle(mut.gr, geom = "rect", color = "steelblue") : 
  no data found

@lawremi
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lawremi commented Nov 17, 2016

Thanks, I fixed it in 1.23.3.

@lawremi lawremi closed this as completed Nov 17, 2016
@seandavi
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Thx, @lawremi.

lawremi pushed a commit that referenced this issue Aug 25, 2017
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggbio@124221 bc3139a8-67e5-0310-9ffc-ced21a209358
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