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minimap2 -ax sr quality score #353

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mictadlo opened this issue Mar 5, 2019 · 1 comment
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minimap2 -ax sr quality score #353

mictadlo opened this issue Mar 5, 2019 · 1 comment
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@mictadlo
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mictadlo commented Mar 5, 2019

Hi,
Does /minimap2 -ax sr consider the quality score of FASTQ files? I have old and new FASTQ files with different Illumina quality scores.

Thank you in advance,

Michal
@mictadlo mictadlo changed the title /minimap2 -ax sr quality score minimap2 -ax sr quality score Mar 5, 2019
@lh3 lh3 added the question label Mar 5, 2019
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lh3 commented Mar 5, 2019

Minimap2 ignores base quality.

@lh3 lh3 closed this as completed Mar 5, 2019
@ezherman ezherman mentioned this issue Jul 26, 2024
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@lh3 @mictadlo