Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Use PSMC for a genome assembly constructed from genomic DNAs of multiple individuals #11

Closed
kazuaki0816 opened this issue Sep 20, 2019 · 1 comment
Closed

Use PSMC for a genome assembly constructed from genomic DNAs of multiple individuals #11

kazuaki0816 opened this issue Sep 20, 2019 · 1 comment

Comments

@kazuaki0816
Copy link

Hi Developer

I have a genome assembly sequence. It was constructed from genomic DNAs obtained two separate individuals of the same species.
Libraries of paired-end and mate-pair reads were created from the two genomic DNAs, and assembled by Platanus assembler.

Is it possible to estimate the population size of such the genome assembly using gDNAs from multiple individuals using PSMC?
@lh3
Copy link
Owner

lh3 commented Sep 20, 2019

Is it possible to estimate the population size of such the genome assembly using gDNAs from multiple individuals using PSMC?

No.

@lh3 lh3 closed this as completed Sep 20, 2019
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@lh3 @kazuaki0816