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Sample Command Doesn't Work With Process Substitution #135

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DarioS opened this issue Mar 23, 2019 · 1 comment
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Sample Command Doesn't Work With Process Substitution #135

DarioS opened this issue Mar 23, 2019 · 1 comment

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@DarioS
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DarioS commented Mar 23, 2019

Using <(zcat fastq.gz) as input produces empty output. All of the examples use plain FASTQ files, which made me think it doesn't work with compressed ones. But, it does. The documentation could be much improved.

@lh3
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lh3 commented Mar 23, 2019

The second sentence in Introduction:

It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.

2-pass sampling of course won't work with stream.

@lh3 lh3 closed this as completed Mar 23, 2019
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