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suggestion for trimfq q=0 #37

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ndaniel opened this issue Sep 19, 2014 · 2 comments
Closed

suggestion for trimfq q=0 #37

ndaniel opened this issue Sep 19, 2014 · 2 comments

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@ndaniel
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ndaniel commented Sep 19, 2014

Would be possible that when running seqtk with "-q 0" (that is "seqtk trimfq -q0 -l N input.fq") the input FASTQ reads are trimmed to the first N bp automatically (and no trimming based quality score is done)?

This would be useful for input FASTQ files which have reads with different sizes.

Daniel

@ndaniel
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ndaniel commented Sep 19, 2014

This "seqtk trimfq -q0 -l N input.fq" works by trimming all the reads to the first N bp but a lot of extra unnecessary computations are done.

@lh3
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lh3 commented Apr 6, 2016

Added an option -L to trim to fixed length (via 46cd37e).

@lh3 lh3 closed this as completed Apr 6, 2016
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