phylosinR: Common methods for phylogenetic tree construction and their implementation in R

phylosinR: Common methods for phylogenetic tree construction and their implementation in R

👩‍🏫👨‍🏫 Author

Yue Zou^1,†, Zixuan Zhang^1,†, Yujie Zeng¹, Hanyue Hu¹, Youjin Hao¹, Sheng Huang^2,#, Bo Li^1,#, et al.

1. College of Life Sciences, Chongqing Normal University, Chongqing 401331, China;
2. Animal Nutrition Institute, Chongqing Academy of Animal Science, Chongqing 402460, China.

• † These authors contributed equally to this work. # Correspondence: libcell@cqnu.edu.cn (B.L.) and stevenhouse@alu.cqu.edu.cn (S.H.)

This is the Cover Page of project (drawn by Miss. Zou)

Note: Here we will provide a bioinformatics pipeline for phylogenetic analysis in R, which includes seven steps:

No.	Content	Author	Time	Development
1	Chunk-01. Loading all aligned DNA sequences	Yue Zou	May. 4th
2	Chunk-02. Constructing phylogenetic tree using NJ	Yue Zou	May. 4th
3	Chunk-03. Constructing phylogenetic tree using MP	Yue Zou	May. 4th
4	Chunk-04. Constructing phylogenetic tree using ML	Yue Zou	May. 4th
5	Chunk-05. Constructing phylogenetic tree using BI	Yue Zou	May. 4th
6	Chunk-06. Constructing phylogenetic tree using Supermatrix strategy	Yue Zou	May. 4th
7	Chunk-07. Constructing phylogenetic tree using Supertree strategy	Yue Zou	May. 4th
8	Chunk-08. To be available...	TBA	TBA