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libscran

C++ libraries for single-cell analysis
README.md

C++ libraries for single-cell analysis

This organization contains bits and pieces of C++ code for single-cell analysis. Most of this was originally taken from the scran R package, with some refactoring to enable re-use outside of R.

Developers can check out the scran-cli repository to see how the various libscran components fit together. For actual analyses, users are referred to the R, Python or Javascript bindings.

Popular repositories Loading

  1. umappp umappp Public

    C++ port of the UMAP algorithm

    C++ 42 15

  2. scran.chan scran.chan Public

    A slimmed down version of scran, based on the C++ library of the same name.

    R 10

  3. qdtsne qdtsne Public

    Quick-and-dirty t-SNE in C++

    C++ 9 2

  4. libscran libscran Public archive

    scran, but in C++.

    C++ 7

  5. mnncorrect mnncorrect Public

    C++ implementation of the MNN correction algorithm

    C++ 4

  6. scran-cli scran-cli Public

    A command line interface to scran

    C++ 3

Repositories

Showing 10 of 24 repositories
  • scrapper Public

    R bindings to C++ code for single-cell analysis

    libscran/scrapper’s past year of commit activity
    R 2 0 0 0 Updated Oct 25, 2024
  • scran.chan Public

    A slimmed down version of scran, based on the C++ library of the same name.

    libscran/scran.chan’s past year of commit activity
    R 10 MIT 0 1 0 Updated Oct 15, 2024
  • libscran Public archive

    scran, but in C++.

    libscran/libscran’s past year of commit activity
    C++ 7 MIT 0 2 0 Updated Oct 15, 2024
  • qdtsne Public

    Quick-and-dirty t-SNE in C++

    libscran/qdtsne’s past year of commit activity
    C++ 9 MIT 2 3 0 Updated Oct 15, 2024
  • scran-cli Public

    A command line interface to scran

    libscran/scran-cli’s past year of commit activity
    C++ 3 MIT 0 0 0 Updated Oct 14, 2024
  • .github Public

    Organization profile

    libscran/.github’s past year of commit activity
    0 MIT 0 0 0 Updated Oct 14, 2024
  • phyper Public

    Hypergeometric distribution tail calculations

    libscran/phyper’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Oct 7, 2024
  • scran_variances Public

    Model per-gene variances in log-expression data

    libscran/scran_variances’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Oct 7, 2024
  • scran_graph_cluster Public

    Graph-based clustering for single-cell data

    libscran/scran_graph_cluster’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Oct 6, 2024
  • scran_qc Public

    Compute simple quality control metrics for each cell

    libscran/scran_qc’s past year of commit activity
    C++ 0 MIT 0 1 0 Updated Oct 4, 2024
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