Pt_CCM_multi.py simulates CCM Ci fluxes in diatom Phaeodactylum triconutum at different temperatures. The code is adapted from Fcyl_CCM/Li_2022.
Python 3.7, Text editor Spyder 4.0.1 or above recommended. The Python scripts have been tested last time in Python 3.7.7 using Spyder 4.0.1.
The Pt_T.csv file provides parameter information to Pt_CCM_multi.py, I recommend put the two files in one folder and run that within the same folder.
Steady state fluxes and Ci concentrations in csv format, plots of Ci concentrations overtime in pdf format.
All files will be written within the default folder.
See Fcyl_CCM/Li_2022 for more details.
If the model helps your research, please cite Li, Meng, and Jodi N. Young. "Temperature sensitivity of carbon concentrating mechanisms in the diatom Phaeodactylum tricornutum." Photosynthesis Research (2023). 2023 Mar 7. doi: 10.1007/s11120-023-01004-2