mimic-oodd

Out of Distribution Detection of MIMIC3

Setting

1. Copy config.default.json to config.json

cp config.default.json config.json

2. change DB_URI in config.json

3. Install python packages.

pip install -r requirements.txt

Run

RNN

# Run by default setting
python run_rnn.py

# See help for more tunable parameters.
python run_rnn.py --help

Cox

# Run by default setting
python run_cox.py

# See help for more tunable parameters.
python run_cox.py --help

DeepSurv

# Run by default setting
python run_deepsurv.py

# See help for more tunable parameters.
python run_deepsurv.py --help

NN

• Run Neural Network Model with Survival Data
  • Duration data will not be used.

# Run by default setting
python run_nn.py

# See help for more tunable parameters.
python run_nn.py --help

RNN Survival

• Run Neural Network Model with Survival Data
  • Duration data will not be used.

# Run by default setting
python run_rnn_survival.py

# See help for more tunable parameters.
python run_rnn_survival.py --help