GeneSequence

Generate processed RNA sequences, CDS sequences and translated protein sequences of all transcripts.

Installation

git clone https://github.com/liu-congcong/GeneSequence.git
cd GeneSequence
make && make clean

GeneSequence -fasta FASTA -gff GFF -type transcript > TRANSCRIPT.FASTA

GeneSequence -fasta FASTA -gff GFF -type cds > CDS.FASTA

GeneSequence -fasta FASTA -gff GFF -type protein > PROTEIN.FASTA

Name		Name	Last commit message	Last commit date
Latest commit History 21 Commits
.DS_Store		.DS_Store
.gitattributes		.gitattributes
.gitignore		.gitignore
GeneSequence (MacOS)		GeneSequence (MacOS)
GeneSequence.c		GeneSequence.c
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
fasta_reader.c		fasta_reader.c
fasta_reader.h		fasta_reader.h
gff_reader.c		gff_reader.c
gff_reader.h		gff_reader.h
hash.c		hash.c
hash.h		hash.h