mp-est 2.1 couldn't analysis more than 100 species

[zhangzhiyangcs]

Hi Liang,
I have gene trees consisted by 106 species. When I run the mp-est v2.1, the segment fault occured. I applied mp-est v2.0 using the same control file and gene tree files without error.
Besides, I have another question that mp-est required the root binary gene tree. There are some tree didn't meet this requirment. While astral software didn't report this issue, I want to compare the results of two softwares with the same input data sets.
Best wishes,
Zhiyang

[lliu1871]

Hi Zhiyang, The input of astral are unrooted gene trees. It does not require gene trees to be rooted. Could you send me the gene trees of 106 species? I will fix the problem. Liang --------------------------------------------------- Liang Liu Graduate Coordinator Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)<http://faculty.franklin.uga.edu/lliu/> ***@***.*** From: ***@***.***> Sent: Wednesday, August 24, 2022 5:19 AM To: ***@***.***> Cc: ***@***.***> Subject: [lliu1871/mp-est] mp-est 2.1 couldn't analysis more than 100 species (Issue #3) [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Hi Liang, I have gene trees consisted by 106 species. When I run the mp-est v2.1, the segment fault occured. I applied mp-est v2.0 using the same control file and gene tree files without error. Besides, I have another question that mp-est required the root binary gene tree. There are some tree didn't meet this requirment. While astral software didn't report this issue, I want to compare the results of two softwares with the same input data sets. Best wishes, Zhiyang — Reply to this email directly, view it on GitHub<#3>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACZITQRK2VMFPEL7XO3ZUXLV2XSKXANCNFSM57OQ7NVA>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[zhangzhiyangcs]

mp-est_test_data.zip
There are results from mp-est v2.0. The gene trees of 106 species is named gene_tree ( compelety the root binary gene tree) and gene_tree1. Thanks a lot.