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How to do the correlation analyses between simulated genetrees and empirical gene trees? #2

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Galaxy-228 opened this issue Jul 19, 2022 · 4 comments

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@Galaxy-228
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Hi, liang:
After done the simulation of gene trees using Phybase, i want do a correlation analyses between simulated genetrees and empirical gene trees , like this:
图片
Thanks so much !!
How to do this analysis ?
Thanks so much !!

@lliu1871
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lliu1871 commented Jul 19, 2022 via email

@Galaxy-228
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Hi,Liang:
Thanks for your reply and suggestions! I want simulate gene trees under different value of Theta, then is it feasible to just use the function sim.coal.mpest ?

@lliu1871
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lliu1871 commented Jul 20, 2022 via email

@Galaxy-228
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Thanks so much !!
Best wishes~

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