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Problem in SSR finding #19

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GauraviTrivedi opened this issue Apr 22, 2021 · 4 comments
Open

Problem in SSR finding #19

GauraviTrivedi opened this issue Apr 22, 2021 · 4 comments

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@GauraviTrivedi
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I am Gauravi Trivedi, I imported a sequence and GFF file in Krait. In order to find SSR, I clicked on "SSR" button without changing any parameters. Sequence got imported but the process of finding SSR is running without giving any output. If I click again on the SSR button, it pops up a text message saying "Task is still running". Can you please have a look at my issue and guide me through.
It will be really helpful.
Thank you

@lmdu
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lmdu commented Apr 22, 2021

Could you use version 1.3.3?. You can check the input file folder, is there a file with .fxi suffix generated? If no, it means your folder has no writable permission.

@GauraviTrivedi
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GauraviTrivedi commented Apr 24, 2021 via email

@GauraviTrivedi
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.fxi file is getting generated by Krait after importing a sequence. In order to find SSRs I clicked on SSR but no result table is shown by the software. In the task area, it is showing that "searching perfect SSRs for the imported sequence" but the result area is blank even after 30 minutes.
image

@lmdu
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lmdu commented May 31, 2021

It was so strange! I wonder if you could tell me your input sequence file. I can test it on my computer.

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