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fumiaki_snp_pipeline.sh Bash script to call SNPs for Mike Grigg's group. It was adapted from a script provided by Fumiaki
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vcf2tbls.sh Bash script to convert vcf files into a table with genotypes (GT field only)
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run_tbl2fasta_loop.sh Bash wrapper script to run python script tbl2fasta.py in a loop to convert the output from (2) above into a fasta file that can be used as input for Split-Tree.
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tbl2fasta.py Python script to convert the output from (2) above into a fasta file that can be used as input for Split-Tree.
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Selection of script working as wrappers to build pipelines mostly in bash
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