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Missing mash distance for some pairs of fasta assembly #73

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tifwan opened this issue Mar 24, 2023 · 1 comment
Open

Missing mash distance for some pairs of fasta assembly #73

tifwan opened this issue Mar 24, 2023 · 1 comment

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@tifwan
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tifwan commented Mar 24, 2023

issue
Mash distance matrix produced NA values for some pairs of mash distance (but were able to generate mash distance when paired with other fasta assemblies)

command
mashtree --mindepth 0 --numcpus 12 *.fasta --outree --outmatrix;

Expected behavior
outmatrix with no mash distance for all repective pairs

Screenshots
(NA values shown in gray color)
Screenshot 2023-03-24 at 3 03 17 PM

Desktop (please complete the following information):

  • OS: Mac
  • Version Mashtree 1.2.0
  • which method did you install with? conda
@madeleinevlt
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Hi,
This error also exist in Mashtree 1.2.2, OS Ubuntu whith Docker installation.
In some outmatrix sample1 vs sample2 distance are calculated but not sample2 vs sample1.

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