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The HclustParam is currently using stats::hclust as clustering function. But other functions exist to do hierarchical clustering, for example fastcluster::hclust.
In some situations, the choice of the function used would be handy as the computation time can be quite high.
A solution would be to add a parameter to HclustParam to let the user choose the function. The default still being stats::hclust.
The new use would be: clusterRows(sce, HclustParam(clust.func = fastcluster::hclust))
Do you think such addition to bluster would be ok?
The text was updated successfully, but these errors were encountered:
The
HclustParam
is currently usingstats::hclust
as clustering function. But other functions exist to do hierarchical clustering, for examplefastcluster::hclust
.In some situations, the choice of the function used would be handy as the computation time can be quite high.
A solution would be to add a parameter to
HclustParam
to let the user choose the function. The default still beingstats::hclust
.The new use would be:
clusterRows(sce, HclustParam(clust.func = fastcluster::hclust))
Do you think such addition to bluster would be ok?
The text was updated successfully, but these errors were encountered: