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    Population genetics tests and estimators for pooled NGS data

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    Multi-Species Gene Enrichment Analysis : a program for enrichment analysis across multiple species. Authors: Philipp Schiffer, Luca Ferretti

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    Compute genetic distances and alignments between complex sequence repeats.

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    Code for analyses of within-host quasispecies, variability and recombination, from deep sequencing of natural and experimental infections of Foot-and-Mouth Disease Virus.

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