Skip to content

Issues: lutteropp/NetRAX

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

38 Open 20 Closed
38 Open 20 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Run-time error: help needed
#87 opened Feb 16, 2023 by yufengwudcs
3
Trouble with options --max_reticulations and --brlen bug Something isn't working
#86 opened Jul 31, 2022 by max-hill
@lutteropp
2
Detailed Future Work Ideas
#85 opened Aug 20, 2021 by lutteropp
1
Noncritical bug in deciding how often to repeat nontopology optimization
#84 opened Aug 20, 2021 by lutteropp
Comparison with PhyLiNC, PhyloDAG, SNAQ, PhyloNET MPL, and PhyloNET ML on simulated data
#83 opened Aug 8, 2021 by lutteropp
34
Snakes Empirical Dataset
#82 opened Aug 8, 2021 by lutteropp
18
Simulated experiments for paper, result files
#81 opened Jun 22, 2021 by lutteropp
9
Idea for a fast, CLV-based network pseudolikelihood
#60 opened Apr 29, 2021 by lutteropp
5
Speed up ranking of candidates
#53 opened Apr 5, 2021 by lutteropp
2
Derivative of Network Loglikelihood for brlen optimization
#49 opened Mar 14, 2021 by lutteropp
44
Empirical dataset
#48 opened Feb 28, 2021 by lutteropp
5
A short observation about per-displayed-tree-clvs
#47 opened Feb 24, 2021 by lutteropp
10
New experimental setup
#46 opened Feb 17, 2021 by lutteropp
28
Unrooted softwired distance
#45 opened Feb 15, 2021 by lutteropp
9
[for later, just curious] Question about Branch Length Optimization
#43 opened Feb 10, 2021 by lutteropp
48
New experimental results
#42 opened Feb 4, 2021 by lutteropp
19
[for later, just curious] Question about Ancestral State Reconstruction
#41 opened Feb 4, 2021 by lutteropp
10
Should we exclude datasets where the simulated network has worse BIC than the raxml-ng best tree?
#40 opened Jan 17, 2021 by lutteropp
3
When and in which order optimize reticulation probs, branch lengths, and model parameters?
#37 opened Jan 11, 2021 by lutteropp
2
Implement Network Checkpointing
#35 opened Dec 17, 2020 by lutteropp
Can the current horizontal moves fix a badly placed reticulation?
#34 opened Dec 17, 2020 by lutteropp
8
Observation: The number of reticulations depends on the chosen brlen linkage mode (and maybe also on the likelihood model)
#33 opened Dec 17, 2020 by lutteropp
7
Parallelize NetRAX
#31 opened Dec 8, 2020 by lutteropp
1
Switch to Search in Waves
#30 opened Dec 8, 2020 by lutteropp
9
Effect of branch-length linkage on Network inference
#28 opened Dec 7, 2020 by lutteropp
2
ProTip! Adding no:label will show everything without a label.