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write_blast
Martin Asser Hansen edited this page Oct 2, 2015
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write_blast writes BLAST type Biopieces records as BLAST tabular output similarly to
blastall -m 8. The BLAST type records can be from read_blast_tab.
... | write_blast [options]
[-? | --help] # Print full usage description.
[-x | --no_stream] # Do not emit records.
[-o <file> | --data_out=<file>] # Write result to file.
[-c | --comment] # Print comment line - Default=no
[-I <file!> | --stream_in=<file!>] # Read input from stream file - Default=STDIN
[-O <file> | --stream_out=<file>] # Write output to stream file - Default=STDOUT
[-Z | --compress] # Compress output using gzip.
[-v | --verbose] # Verbose output.
... | write_blast -x -c -o blast.tab # Write BLAST table with comment line to 'blast.tab'.
... | write_blast -x -Z -o blast.tab.gz # Write zipped BLAST table to 'blast.tab.gz'.
Martin Asser Hansen - Copyright (C) - All rights reserved.
August 2007
GNU General Public License version 2
http://www.gnu.org/copyleft/gpl.html
write_blast is part of the Biopieces framework.