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Buffer size tweak #314

Merged
merged 1 commit into from
Sep 20, 2019
Merged

Buffer size tweak #314

merged 1 commit into from
Sep 20, 2019

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taoliu
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@taoliu taoliu commented Sep 19, 2019

Related to #313.

  1. Enable --buffer-size option for filterdup, pileup, randsample, and refinepeak.
  2. Catch MemoryError and give suggestion to users. Such as:
!!!MemoryError occurred. If your input file has a large number of contigs/chromosomes, decrease the buffer_size value by setting --buffer-size option.
  1. Update testing script to run 50k contigs file.

Also:

  1. Decrease the sizes of the testing files of BAMPE and BEDPE.

@taoliu
Related to #313. Enable --buffer-size for filterdup, pileup, randsamp…
d4fc920 
…le, and refinepeak. Catch MemoryError and give suggestion to users. Update testing script to run 50k contigs file. Decrease filesize of the testing files of BAMPE and BEDPE.
@taoliu taoliu self-assigned this Sep 19, 2019
@taoliu taoliu added the v2.1.3 v2.1.3 features label Sep 19, 2019
@taoliu taoliu merged commit a5440a7 into master Sep 20, 2019
@taoliu taoliu deleted the feat_tweak_buffer_size branch September 6, 2024 20:03
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