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maduprey/README.md

I’m a research data scientist at RTI, modeling communicable and noncommunicable disease, and graduate student in the Applied and Computational Mathematics program at Johns Hopkins. My research interests lie at the intersection of mathematics, computational methods, and biological systems.

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  1. conftopo conftopo Public

    Explore topological changes across protein conformational changes

    Python 1

  2. delayexplore delayexplore Public

    Interactively view delay embeddings in R^3

    R

  3. dynamic-time-warping dynamic-time-warping Public

    Dynamic time warping and calculation of optimal warp path

    R

  4. protein-conformation-topology protein-conformation-topology Public

    Persistent homology across protein conformational changes

    Jupyter Notebook 1 1

  5. protein-structure-learning protein-structure-learning Public

    Protein classification with deep learning and boosted trees using topological features

    Jupyter Notebook 1