FastPaSS is a spectral library search alogrithm for peptide-spectrum matching based on SpectraST 4.0. The SpectraST algorithm uses inner (dot) products to compute similarity between query and library spectra. In FastPaSS, these are replaced by matrix multiplications on the GPU for increased performance. The options now support more features from SpectraST 5.0.
Requirements:
- CUDA toolkit
- CMAKE build automation
- Pugixml (included)
- Stringencoders (included)
Use the available macros in the Makefile or use the cmake itself:
$ mkdir build; cd build; cmake -DCMAKE_BUILD_TYPE=Release ..; make install
The FastPaSS executable is located in the 'bin' folder. Use FastPaSS -h to view the available options and description.
Repository: http://pugixml.org/
Copyright (C) 2006-2014, by Arseny Kapoulkine (arseny.kapoulkine@gmail.com) Report bugs and download new versions at http://pugixml.org/
This library is distributed under the MIT License:
Copyright (c) 2006-2014 Arseny Kapoulkine
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Repository: https://code.google.com/p/stringencoders/
Copyright 2005, 2006, 2007 Nick Galbreath -- nickg [at] modp [dot] com All rights reserved.
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