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JAMMv1.0.8

Pre-release
Pre-release
  • changed normalization options to either global or chromosome specific, option in peakfinder.r is normAdjust (default is TRUE)
5a9a46f
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Changed input checks for better compatibility with pipeline tools.

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add -T for custom temporary directoy - streamlined some code and fixd a bug in peakfinder.r

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changelog; fixed a minor bug with enriched window finding

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changelog: - fixed bugs in paired-end handling - fixed bugs in automated threshold that slowed it down when input was present

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Changelog: fixed bugs in paired-end handling-added an option to set pre-scheduling to FALSE for mclapply-some cryptic errors now replaced with warnings or more user-friendly error messages-fixed a bug in peakfinder related to finding one enriched window in a chromosome-added simple depth normalization option to SignalGenerator.sh