Supporting code for the article:

Deep sequencing of extracellular eDNA enables total biodiversity assessment of ecosystems

Manu, S., & Umapathy, G. (2023) Ecological Indicators

List of files in the repo:

1. metadata.tsv - Metadata spreadsheet
2. envs/ - Conda environments used for the snakemake workflow
3. scripts/ - R scripts used to perform the statistical analyses and visualizations
4. create_databases.smk - Snakemake workflow used to download and set up the databases
5. analysis_workflow.smk - Snakemake workflow used to perform the taxonomic analyses