This repository contains the java code used to construct our compendium of tissue-specific transcriptional regulatory circuits available at:
Input data and intermediary files required to build the circuits are included in a single archive (Supplementary_data.zip, doi:10.7303/syn5018600.1) that can be downloaded from:
- Marbach D, Lamparter D, Quon G, Kellis M, Kutalik Z, and Bergmann S. Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases. Submitted (preprint available upon request).
- University of Lausanne, Department of Medical Genetics
- Swiss Institute of Bioinformatics
- SystemsX.ch (SysGenetiX project)