This repository contains the java code used to construct our compendium of tissue-specific transcriptional regulatory circuits available at:

• regulatorycircuits.org

Input data and intermediary files required to build the circuits are included in a single archive (Supplementary_data.zip, doi:10.7303/syn5018600.1) that can be downloaded from:

• regulatorycircuits.org/download

Reference

• Marbach D, Lamparter D, Quon G, Kellis M, Kutalik Z, and Bergmann S. Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases. Submitted (preprint available upon request).

License

• MIT license (free, open-source)

Project lead

• Daniel Marbach

Advisor

• Sven Bergmann

Affiliations

• University of Lausanne, Department of Medical Genetics
• Swiss Institute of Bioinformatics

Extramural funding

• SystemsX.ch (SysGenetiX project)

Support