Error with preamble and exc_clear

[marcelm]

From Levy...@gmail.com on August 22, 2012 22:41:11

What steps will reproduce the problem? 1. running cutadapt with any files What is the expected output? What do you see instead? Instead of proper cutadapt running, I see the code copied below

Traceback (most recent call last):
File "/home/rnaseq/programs/execute/cutadapt", line 5, in
import _preamble
ImportError: No module named _preamble

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "$HOME/programs/execute/cutadapt", line 7, in
sys.exc_clear()
AttributeError: 'module' object has no attribute 'exc_clear' What version of the product are you using? On what operating system? cutadapt 1.1 on linux with python 3.2 Please provide any additional information below. I'm sorry if this is a simple question but I am new to linux and having errors trying to use cutadapt. Please help me determine what is incorrect about my installation or coding. Thank you.

Original issue: http://code.google.com/p/cutadapt/issues/detail?id=49

[marcelm]

From marcel.m...@tu-dortmund.de on August 23, 2012 00:33:16

Please edit the file $HOME/programs/execute/cutadapt and replace the line "sys.exc_clear()" with "pass". That command isn't available in Python 3 and the fix isn't included in cutadapt 1.1.

[marcelm]

From marcel.m...@tu-dortmund.de on October 12, 2012 04:16:40

Status: Fixed