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  1. MRcovid MRcovid Public

    HTML 11 4

  2. MRPipeline MRPipeline Public template

    Investigating the causal relationship between exposures and Alzheimer's endophenotypes

    R 4

  3. postImpute postImpute Public

    Post imputation QC and processing of Michigan Imputation Server Jobs

    Python 3 3

  4. gatk-mitochondria-pipeline gatk-mitochondria-pipeline Public

    Snakemake workflow for GATK SNP and INDEL variant calling on mitochondria DNA

    Python 2 1

  5. imputePipeline imputePipeline Public

    A Snakemake pipeline to prepare binary PLINK files for the Michigan Imputation Server.

    Python 1 3

  6. GWASampleFiltering GWASampleFiltering Public

    Post imputation QC and processing of Michigan Imputation Server Jobs

    Python 1 1

Repositories

Showing 10 of 32 repositories
  • lab_operations Public

    Guides, scripts and config files for everyday operations, onboarding and offboarding

    marcoralab/lab_operations’s past year of commit activity
    Shell 0 CC0-1.0 0 0 0 Updated Nov 7, 2024
  • lab_scripts Public

    Common scripts for the Goate and Marcora labs

    marcoralab/lab_scripts’s past year of commit activity
    R 1 0 0 0 Updated Nov 7, 2024
  • qc-ancestry-impute-qc Public

    An integrated pipeline to do initial genotype QC, impute by ancestry, combine results and do remaining QC on microarray genotypes

    marcoralab/qc-ancestry-impute-qc’s past year of commit activity
    Python 1 2 0 0 Updated Oct 29, 2024
  • imputePipeline Public

    A Snakemake pipeline to prepare binary PLINK files for the Michigan Imputation Server.

    marcoralab/imputePipeline’s past year of commit activity
    Python 1 3 0 0 Updated Oct 29, 2024
  • GWASampleFiltering Public

    Post imputation QC and processing of Michigan Imputation Server Jobs

    marcoralab/GWASampleFiltering’s past year of commit activity
    Python 1 1 1 0 Updated Oct 29, 2024
  • postImpute Public

    Post imputation QC and processing of Michigan Imputation Server Jobs

    marcoralab/postImpute’s past year of commit activity
    Python 3 3 0 0 Updated Oct 29, 2024
  • vcf_liftover Public

    Pipeline for lifting over vcf files and filesets

    marcoralab/vcf_liftover’s past year of commit activity
    Python 0 0 0 0 Updated Oct 24, 2024
  • gvc_agora_opentargets_ora Public
    marcoralab/gvc_agora_opentargets_ora’s past year of commit activity
    0 0 0 0 Updated Oct 24, 2024
  • admixture_pipeline Public

    Pipeline to run unsupervised ADMIXTURE with a gnomAD reference

    marcoralab/admixture_pipeline’s past year of commit activity
    Python 1 1 0 0 Updated Oct 23, 2024
  • RAREMETAL Public

    RAREMETAL pipeline

    marcoralab/RAREMETAL’s past year of commit activity
    0 0 0 0 Updated Jul 22, 2024
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