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@MarioniLab

Marioni Laboratory

A central repository for projects in John Marioni's group

Popular repositories

  1. miloR miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    R 312 19

  2. EmbryoTimecourse2018 EmbryoTimecourse2018 Public

    Data and analysis scripts for our Embryo Timecourse paper.

    HTML 64 35

  3. DropletUtils DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    R 54 25

  4. MNN2017 MNN2017 Public archive

    Code for the MNN manuscript figures

    HTML 51 19

  5. miloDE miloDE Public

    Framework for sensitive DE testing (using neighbourhoods)

    R 51 2

  6. scran scran Public

    Clone of the Bioconductor repository for the scran package.

    R 39 23

Repositories

Showing 10 of 89 repositories
  • CELLOseq Public

    Transposable element expression at unique loci in single cells with CELLO-seq

    MarioniLab/CELLOseq’s past year of commit activity
    Shell 7 MIT 4 1 0 Updated Jun 17, 2024
  • miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    MarioniLab/miloR’s past year of commit activity
    R 312 GPL-3.0 19 25 0 Updated Jun 3, 2024
  • EmptyDropsMultiome Public

    Removing empty droplets in multiome datasets

    MarioniLab/EmptyDropsMultiome’s past year of commit activity
    R 8 0 0 0 Updated Jun 3, 2024
  • BE_perturb_seq_drug_resistance Public
    MarioniLab/BE_perturb_seq_drug_resistance’s past year of commit activity
    HTML 0 0 0 0 Updated May 8, 2024
  • EmptyDropsMultiome2023_final Public
    MarioniLab/EmptyDropsMultiome2023_final’s past year of commit activity
    R 3 0 0 0 Updated Apr 23, 2024
  • analysis_chimera_data Public

    Systematic characterisation of perturbations in complex developing cell populations reveals mechanisms underpinning development and disease

    MarioniLab/analysis_chimera_data’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 10, 2024
  • miloDE Public

    Framework for sensitive DE testing (using neighbourhoods)

    MarioniLab/miloDE’s past year of commit activity
    R 51 2 2 0 Updated Apr 5, 2024
  • miloDE_tutorials Public

    this folder stores Rmds and htmls to miloDE vigenettes

    MarioniLab/miloDE_tutorials’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 19, 2024
  • miloDE_analysis Public

    Folder contains scripts to generate and analyse data for miloDE

    MarioniLab/miloDE_analysis’s past year of commit activity
    HTML 2 0 0 0 Updated Mar 19, 2024
  • DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    MarioniLab/DropletUtils’s past year of commit activity
    R 54 25 14 0 Updated Mar 12, 2024
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