Martin Vickers martinjvickers

Pinned

1. KAST

   Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.

   C++ 4

2. dismiss-galaxy

   Forked from uhkniazi/dismiss

   DISMISS is an R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. It does this by analyzing the proportions of fi…

   R

3. cuffdiff2edgeR

   Perl Script to convert CUFFDIFF output for use with edgeR and Trinity DE analysis

   Perl 2

4. cuff_diff_2_xiao_score

   Implementation of Xiao., Y. 2014. A novel significance score for gene selection and ranking.

   Python

5. xftools

   Tools developed for use in Xiaoqi Feng's lab.

   C++ 3 2

6. kmer_counter

   K-Mer counter using TBB and all of your RAM!

   C++