Ottar Bjørnstad¹𝄒², Katriona Shea¹, Martin Krzywinski³, Naomi Altman⁴
- Department of Biology, The Pennsylvania State University, State College, PA, USA.
- Department of Entomology, The Pennsylvania State University, State College, PA, USA.
- Canada's Michael Smith Genome Sciences Center, Vancouver, British Columbia, Canada.
- Department of Statistics, The Pennsylvania State University, State College, PA, USA.
Explore interactive figures or download the code accompanying the column.
Download R Studio and install packages.
install.packages(c("shiny","deSolve","ggplot2","tidyverse","stringr","shinyjs","shinyWidgets"))
Run the app by loading app.R
and cliking Run App
.
- Martin Krzywinski | Coding
- Ottar Bjørnstad | Code template and tips
Initial release.
Minor text changes and fixed typos.
UI tweaks.
Added link to SEIRS column.
Added link to uncertainty and management column.
Bjørnstad, O., Shea, K., Krzywinski, M. & Altman, N. Points of Significance: Modelling infectious epidemics. (2020) Nature Methods 17:455-456. (interactive figures, download code)
Bjørnstad, O., Shea, K., Krzywinski, M. & Altman, N. Points of Significance: The SEIRS model for infectious disease dynamics. (2020) Nature Methods 17:557-558. (interactive figures, download code)
Shea, K., Bjørnstad, O., Krzywinski, M. & Altman, N. Points of Significance: Uncertainty and the management of epidemics. (2020) Nature Methods 17 (in press). (interactive figures, download code)
This project is licensed under the [https://creativecommons.org/licenses/by-nc/4.0/](Creative Commons Attribution-NonCommercial 4.0 International Public License) - see the LICENSE file for details.