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Add TUV-x config files and use rates to drive chemistry #7

Merged
merged 57 commits into from
Mar 14, 2023
Merged

Add TUV-x config files and use rates to drive chemistry #7

merged 57 commits into from
Mar 14, 2023

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mattldawson
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Modifies TUV-x wrapper to allow TUV-x to drive chemistry for MOZART and TS1 mechanisms:

  • updates build scripts for changes to TUV-x CMake build
  • adds TUV-x configuration files for MOZART, TS1, and TSMLT (draft) mechanisms
  • sets up TUV-x to set photo rates used in chemistry solver
  • adds EUV rate calculations to TUV-x wrapper
  • adds special NO rate calculation to TUV-x wrapper
  • applies max solar zenith angle to TUV-x calculations
  • maps TUV-x photo rates to CAM photo reactions
  • outputs TUV-x rate diagnostics on CAM vertical grid
  • adds flag to configuration files to disable aerosol effects on radiation field calculations
  • adjusts mapping of profiles/grids at the top of the column

@mattldawson
add height and temperature updaters to tuv-x wrapper
5da13c7
@mattldawson
set up remaining profile updaters
7a59241
@mattldawson
send wavelength grid to TUV-x
ffb0f5e
@mattldawson
add radiator updater for aerosols
9cebe0d
@mattldawson
send CAM height and temperature data to TUV-x
3241b31
@mattldawson
fix height variables sent to tuvx
8e100d5
@mattldawson
send surface albedos to TUV-x
64f9a3b
@mattldawson
send air density to TUV-x
49d323b
@mattldawson
send O2 and O3 concentrations to TUV-x
0a0b3ff
@mattldawson
sent solar zenith angle to TUV-x
0562e9d
@mattldawson
send ET flux to tuv-x
69a5897
@mattldawson
use native TUV-x grid for photo calcs
e3cc2ab
@mattldawson
send aerosol optical properties to tuv-x
1e05ffe
@mattldawson
output whether using online aerosols; include air scale height for ex…
80c3479 
…o values
@mattldawson
send above-column O2 and O3 concentrations to TUV-x
5d89cb7
@mattldawson
add diagnostic TUV-x output; set wavelength edges; fix et flux values
422aba7
@mattldawson
pass earth sun distance to TUV-x
147e15a
@mattldawson
minor clean up
7854fde
@mattldawson
update externals file
f8be1bb
@mattldawson
update for changes in TUV-x
996bd91
@mattldawson
merge main to develop-167-tuvx-inputs
1011882
@mattldawson
draft MOZART TUV-x configuration file
ea8a654
@mattldawson
draft MOZART-TS1 TUV-x config file
9ded52f
@mattldawson
merge develop-add-tuvx into develop-163-mechanism-config
facccaf
@mattldawson
draft MOZART-TSMLT TUV-x config file
a3b66a0
@mattldawson
draft mapping for tuv-x photo rates
ee5f4fc
@mattldawson
mix tuv map message passing
f4fa3dc
@mattldawson
update TUV-x TS1 config
583c4b5
@mattldawson
add euv rate calc calls to tuv-x
1f433ff
@mattldawson
fix tuvx_active flag use; fix height values near surface
fd715e1
mattldawson and others added 25 commits December 1, 2022 14:43
@mattldawson
add missing MOZART photo rates
fe1f142
@mattldawson
update for new TUV-x build scripts
d5c4d84
@mattldawson
update MOZART TUV-x config
26375d9
@mattldawson
update TS1 TUV-x config format
3d8852c
@mattldawson
add h2o photo rates to TS1 TUV-x config
364d905
@mattldawson
add new datasets to TS1 TUV-x config
d29ea42
@mattldawson
update TUV-x config format
3c6def8
@mattldawson
add remaining TS1 config excluding jno
a7e1030
@mattldawson
add jno stub function
be7e7f1
@mattldawson
finish jno calculation
37326c4
@mattldawson
update TSMLT config file
0608ae3
@mattldawson
update tuv-x build flags
1b4f238
@mattldawson
Update tuvx_MOZART_TS1.json
790a0e1 
Fix O2 rate configs
@mattldawson
output photo rate diagnostics on CAM vertical grid
4b8ca93
@mattldawson
Merge branch 'develop-163-mechanism-config' of https://github.com/mat…
a13d6f8 
…tldawson/CAM into develop-163-mechanism-config
@mattldawson
fix TUV-x config filees for air radiator; add disable aerosol option …
22811e6 
…for TUV-x
@mattldawson
improve et flux edge calcs; use scale height for 02, 03
770f6cc
@mattldawson
fix index offset in photo rate profiles
620b8d4
@mattldawson
minor profile calculation changes
d69a00a
@mattldawson
add thin top layer to TUV-x grid
1e8d9fa
@mattldawson
adjust top layer density calculations
c47a4c3
@mattldawson
add in ET mid values
60e0f54
@mattldawson
update build; adjust O2 profile
eb69196
@mattldawson
update tuvx config files
1a2204e
@mattldawson
use TUV-x from first time step
1a85f0a
@mattldawson mattldawson merged commit 6d528a2 into develop-add-tuvx Mar 14, 2023
@mattldawson mattldawson deleted the develop-163-mechanism-config-debug branch March 14, 2023 15:29
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@K20shores K20shores K20shores approved these changes

@stacywalters stacywalters Awaiting requested review from stacywalters

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@mattldawson @K20shores